Earnings call transcript: Illumina beats Q2 2025 EPS forecast by 17.8%

Illumina Inc. reported its second-quarter 2025 earnings, surpassing analysts’ expectations with an EPS of $1.19 compared to the forecasted $1.01, a 17.8% surprise. The company also reported a revenue of $1.06 billion, slightly above the $1.05 billion forecast. Despite the positive earnings report, Illumina’s stock declined by 3.57% in after-hours trading, closing at $106, down from its last close of $106.66. According to InvestingPro data, while the company has shown strong quarterly performance, it remains unprofitable over the last twelve months, with a market capitalization of $16.3 billion.

Key Takeaways

• Illumina’s Q2 2025 EPS exceeded expectations by 17.8%.
• Revenue reached $1.06 billion, a slight beat over forecasts.
• Stock price fell 3.57% in after-hours trading despite earnings beat.
• Operational improvements led to a 160 basis point increase in operating margin.
• Strategic acquisitions and product updates are driving innovation.

Company Performance

Illumina’s performance in Q2 2025 showed resilience amid challenging market conditions. The company’s revenue decreased by 3% year-over-year, attributed to constraints in the research market due to NIH funding uncertainties. The non-GAAP operating margin improved to 23.8%, reflecting the effectiveness of cost reduction initiatives and operational excellence actions. InvestingPro analysis reveals a robust gross profit margin of 68.62% and a healthy current ratio of 1.86, indicating strong operational efficiency despite challenges. Subscribers to InvestingPro can access detailed financial health scores and additional insights about Illumina’s operational metrics.

Financial Highlights

• Revenue: $1.06 billion, down 3% year-over-year.
• Non-GAAP EPS: $1.19, up 9% year-over-year.
• Non-GAAP Operating Margin: 23.8%, increased by 160 basis points.
• Cash Flow from Operations: $234 million.
• Free Cash Flow: $204 million.

Earnings vs. Forecast

Illumina’s EPS of $1.19 significantly outperformed the forecast of $1.01, marking a 17.8% surprise. Revenue also slightly exceeded expectations at $1.06 billion compared to the forecasted $1.05 billion. This positive surprise contrasts with previous quarters, where results were more in line with expectations.

Market Reaction

Despite the earnings beat, Illumina’s stock fell by 3.57% in after-hours trading. This decline may reflect investor concerns over the company’s year-over-year revenue decrease and ongoing challenges in the research market. The stock is trading well below its 52-week high of $156.66, indicating broader market pressures. InvestingPro analysis suggests the stock is currently trading near its Fair Value, with management actively buying back shares. For comprehensive valuation analysis and additional ProTips, investors can access the detailed Pro Research Report, available exclusively to InvestingPro subscribers.

Outlook & Guidance

For fiscal year 2025, Illumina projects revenue between $4.23 billion and $4.31 billion, with an anticipated revenue decline of 0.5% to 2.5% in constant currency. The company has raised its operating margin guidance to 22-22.5% and EPS guidance to $4.45-$4.55. Illumina expects improved growth in 2026 and 2027, driven by its multiomics strategy and clinical market expansion.

Executive Commentary

CEO Jacob Tyson highlighted the company’s strategic focus, stating, "We expect 2026 to look better than 2025 and 2027 to look better than 2026." He emphasized the potential of the genomic sequencing market, noting, "The opportunity in this space is tremendous." Tyson also pointed to the clinical space as a key growth driver.

Risks and Challenges

• Ongoing challenges in the research market due to NIH funding uncertainties.
• Tariffs impacting gross margin by approximately 110 basis points.
• Potential competitive threats in the genomic sequencing market.
• Gradual transition to NovaSeq X may affect short-term revenue growth.
• Economic pressures that could influence consumer and institutional spending.

Q&A

During the earnings call, analysts inquired about the stability of Illumina’s business in China and the anticipated transition to the NovaSeq X platform. Executives assured that while challenges in China persist, the business remains stable, and the transition to NovaSeq X is expected to be gradual, supporting long-term growth.

Full transcript - Illumina Inc (ILMN) Q2 2025:

Conference Operator: Good day, ladies and gentlemen. Welcome to the Second Quarter twenty twenty five Illumina Earnings Conference Call. At this time, all participants are in a listen only mode. After the speakers’ presentation, we will conduct a question and answer session. Please be advised that today’s conference is being recorded.

I would now like to hand the call over to Interim Head of Investor Relations, Brian Blanchett.

Brian Blanchett, Interim Head of Investor Relations, Illumina: Hello, everyone, and welcome to Illumina’s second quarter twenty twenty five earnings call. Today, we will review our financial results released after market close and provide commentary before opening for Q and A. Our earnings release is available in the Investor Relations section of illumina.com. Speaking today are Jacob Tyson, Chief Executive Officer and Ankur Dhingra, Chief Financial Officer. Jacob will provide an update on Illumina’s businesses, followed by Ankur’s review of the company’s financials.

All financial information shared on this call relates to Core Illumina. For historical consolidated financials, please refer to our earnings release and SEC filings. Please note that all year over year revenue growth rates discussed during the prepared remarks are presented on a constant currency basis to exclude the impact of foreign exchange fluctuations. We encourage you to review the GAAP reconciliation of our non GAAP measures, which can be found in today’s release and in the supplemental data available on our website. This call is being recorded, and the audio will be archived in our Investors section of our website.

It is our intent that all forward looking statements regarding the financial results and commercial activity made during today’s call will be protected under the Private Securities Litigation Reform Act of 1995. To better understand the risks and uncertainties that could cause actual results to differ, we refer you to the documents that Illumina files with the Securities and Exchange Commission, including our most recent forms 10 Q and 10 ks. With that, I will now turn the call over to Jacob.

Jacob Tyson, Chief Executive Officer, Illumina: Thank you, Brian, and good afternoon, everyone. In the second quarter, despite a year over year decline, we delivered revenue at the high end of our guidance range at approximately $1,060,000,000 At the same time, the team’s strong execution drove profitability above expectations with non GAAP operating margin of 23.8% and a non GAAP EPS of $1.19 Together, these results reflect meaningful progress across the business and reinforce our view that the underlying fundamentals remain robust. In Q2, we saw ongoing adoption of our NovaSeq X platform with greater than 50 placements, increased high throughput consumable sales, especially among NovaSeq X users as the transition continues to progress, continued advancement of our innovation road map with key updates to our multiomics strategy, reflecting disciplined execution of our long term capital deployment plan. We are encouraged by the strength we are seeing in the clinical markets, which now accounts for roughly 60% of total sequencing consumables. Clinical has proven more resilient and in some areas is exceeding expectations, reinforcing our confidence in the durability of clinical demand.

We’re seeing this momentum across multiple clinical applications. In oncology, adoption continues to grow for comprehensive genomic profiling, and we are seeing increased interest in sequencing intensive applications like minimal residual disease, which sets us up well for future clinical growth. In genetic disease testing, growth continues to be driven by expanding national genome programs and broader adoption of whole genome and whole exome sequencing for rare diseases. In reproductive health, we are seeing growth in NIPT sample volumes, particularly in The US as more customers complete validation and ramp up clinical testing. We continue to believe the long term clinical opportunity remains significant, with NGS adoption increasing as genomics becomes standard of care for therapy selection, early detection, monitoring, and expands into other disease types.

While clinical demand has been encouraging, the research environment, particularly in The US, remains constrained amid ongoing NIH funding uncertainty. As expected, demand from this segment remained soft in Q2 with some labs delaying projects or holding off on hiring due to concerns about the future grant availability. In the meantime, we’re actively working with our customers to help them navigate this period. Separately, in China, our ability to export instruments is still restricted. We continue to engage with regulators to identify solutions that supports our long term sustainable presence in the country, and we will keep you updated on any material developments.

As we navigate these near term market dynamics, our focus remains on disciplined execution and laying the foundation for long term success. The focus underpins our commitment to achieving our financial targets and delivering high single digit revenue growth and expanding non GAAP operating margin to 26% by 2027. We are advancing towards these targets by delivering across our three key drivers: growing our core sequencing business, including continued progress with NovaSeq X transition scalable entry into Multiomics to complement our sequencing platforms, and expanding our services, data and software offerings to provide more integrated customer solutions. Together, these priorities support our broader strategy and vision for the industry of shifting from cost per gigabase model to delivering the highest quality biological insight at the lowest end to end cost. Now I’d like to focus on the progress we’re making in our multiomics driver, which is centered on delivering differentiated solutions that integrate with our sequences.

We’ve already announced our capabilities in single cell, CRISPR based perturbed seq, and spatial analysis. And in June, we took another step forward in proteomics with our announced acquisition of Sumo Logic from Standard Bio Tools. This acquisition expands our presence in affinity based proteomics, a small but fast growing segment of the broader proteomics market and builds on the exclusive commercial relationship we have had with Somologic since 2021. Somologic is a key player in high throughput proteomics. Their Somoscan assay can analyze over 9,500 unique human proteins from small biological samples, delivering deep, actionable insights for drug discovery, diagnostics, and health monitoring.

What sets their technology apart is its proprietary somamer binding reagents, highly precise affinity reagents that bind to specific proteins with unmatched sensitivity, scalability, and reproducibility. This approach delivers broader coverage than other methods by reducing the time and cost of deeper proteomics analysis. Bringing Somologic into Illumina builds on our existing long standing partnership. As our collaboration progressed, our conviction in that technology deepened, and we saw a clear opportunity to accelerate innovation by integrating their capabilities into our innovation engine. With Illumina’s expertise in product development and global commercial reach, we will scale their technology faster, expand customer adoption, and achieve greater operational efficiencies.

Sumo Logic is a strong strategic fit for Illumina. Their technology, when paired with our platforms, offer a highly scalable and cost efficient solution for proteomics discovery. By more deeply integrating proteomics in our ecosystem, we’re expanding our ability to deliver greater biology insights through our end to end workflows. This enhances the value proposition of the NovaSeq X and creates the potential to extend somologic’s technology into other multiomic applications such as single cell and spatial. With this addition, we are advancing TruBot’s a more comprehensive multiomics portfolio spanning DNA, RNA, methylation, and now proteomics.

We expect the transaction to close in the 2026. After obtaining the necessary regulatory approvals, we are looking forward to welcoming the Somologic team to Illumina and expanding the impact of proteomics together. As we advance key elements of our multiomics strategy, we’re also seeing strong momentum across our recent platform launches. One example is the MiSeq I 100 plus, our latest benchtop sequencer. Since launching late last year, we placed more than 500 instruments and are now seeing customers order additional units after just a few months of use.

Customer feedback on the MySeq I 100 platform remains very positive. Customers are calling it a game changer, highlighting faster turnaround times, ease of use, and room temperature shipping, and storage arrangements. All features that make sequencing more accessible for labs operating in a wide range of resource settings. This reduces reliance on centralized labs, shortens diagnosis turnaround time, and gives customers greater autonomy for running oncology, infectious disease, and other clinical applications. These features are especially attractive to labs adopting NGS for the first time as well as those in emerging markets.

The MiSeq I 100 platform currently supports 18 proven workflows, including nine fully integrated from library prep through analysis. This level of integration reflects a broader shift in how we approach innovation grounded in deeper customer insights and close collaboration throughout development. MiSeq I 100 sets a new standard for the future of Illumina innovation, optimizing for complete end to end workflows that lower barriers to adoption and deliver high quality insights at scale. Before I hand it over to Ankur, I want to briefly share our views on the remainder of 2025. We are encouraged by the momentum in our Q2 results, the progress of our innovation road map, and we remain focused on disciplined execution.

However, we continue to approach the second half of the year with caution, given the ongoing funding uncertainties in The U. S. Research market. That said, we are raising our guidance for total company revenue growth as well as total reported revenue, non GAAP operating margin and non GAAP EPS, reflecting strong execution and operating discipline across the organization. I will now turn it over to Ankur to provide more detail on our results and outlook before we move into Q and A.

Ankur Dhingra, Chief Financial Officer, Illumina: Thank you, Jacob, and good afternoon, everyone. I will give you an overview of our second quarter financial results, provide more color about revenue, expenses, earnings and developments on our balance sheet and capital deployment, and then speak about our outlook going forward. Before I get into the details of the financial performance, let me provide a high level view of how the second quarter played out. In Q2, we made further progress on our long range goals and delivered results exceeding our expectations for the quarter. Revenue, although lower year over year, came in at the high end of our guidance range, driven by strength in high throughput consumables.

We saw strong organic margin expansion and EPS of 1.19 which well exceeded the top of our guidance range. As expected, research customers, especially The U. S. Academic and government customers, continue to manage their budgets tightly in the face of funding constraints. The trends in Q2 were generally in line with what we saw in the latter part of Q1.

On the other hand, our clinical customers continue to invest in expanding their portfolio and scaling current on market tests. Our Greater China business was slightly better than the guide, and our customers in Greater China continued to be very engaged and supportive of Illumina’s differentiated technology. Sales of consumables have held up well, and we remain in discussion with the relevant authorities. Now let me provide you details of the financial performance. Second quarter revenue of $1,060,000,000 was down approximately 3% year over year on both constant currency and reported basis.

Greater China revenue of $63,000,000 was slightly ahead of expectations and represented a $12,000,000 decline from the 2024. Excluding Greater China, Illumina revenue was down approximately 2% on a constant currency basis. Sequencing consumables revenue of $740,000,000 was approximately flat year over year and up approximately 6% sequentially on a reported basis. High throughput consumables grew both sequentially and year over year, including a greater than 10% sequential growth in NovaSeq X consumables revenue. Strong growth in the clinical segment, which now represents roughly 60% of our total sequencing consumables, is primarily driven by broader adoption of comprehensive genomic profiling and increased momentum in sequencing intensive applications like MRD, which sets us up well for future growth.

The X transition continues to progress. As we’ve reported, over 80% of the sequencing volumes for our research customers have already transitioned to X, with these customers continuing to face budget constraints. Our clinical customers continue with the transition, working through validation and balancing their investments between on market tests versus development of new tests. The clinical x transition has progressed to roughly 55% in the quarter. In q two, roughly 69% of high throughput gigabases shipped and approximately 44% of high throughput consumables revenue was on the NovaSeq x series.

We continue to make progress on the high throughput transition from what we previously disclosed. And at the current pace, we anticipate that towards the 2025, approximately 50% of high throughput revenue and approximately 75% of GB shipped to be a NovaSeq X series. We expect this to be driven by the clinical segment as customers scale on the NovaSeq X. About sequencing activity, total sequencing GD output on our connected high and mid throughput instruments grew at a rate of more than 30% year over year, driven by robust strength in clinical but more muted growth from our research customers. Although not a predictor of near term revenue, GB output on connected instruments provides us a directional view of underlying applications demand and levels of utilization of our connected instruments and consumables.

Sequencing instruments revenue of $96,000,000 was down approximately 18% year over year in q two. As we saw the effect of constrained budgets from our high and mid throughput research customers. The funnel pipelines held, but we saw extended decision times amongst our customers. Approximately 60% of the excess placed in q two were to clinical customers. On the low throughput side, MiSeq I 100 plus launch continues to progress quite well, and our customers have had positive reviews for the platform and are excited about the MiSeq 100 base model launch next month.

In Greater China, our instruments business was down approximately 40% due to restrictions on exportation. Sequencing service and other revenue of $136,000,000 was down approximately 5% year over year, in line with expectations. The decrease was mainly due to the timing of certain strategic partnership revenues last year related to the EGD consortium. Excluding those items, our core services and informatics business grew high single digits. Moving to the rest of Illumina P and L.

Non GAAP gross margin was 69.4 for the second quarter, which increased 200 basis points quarter over quarter and remained stable year over year. We experienced favorable product mix in our sequencing business driven by high consumables revenue mix. Additionally, our ongoing operating excellence action plan initiatives contributed to improved gross margin performance this quarter. Tariffs had a partial impact this quarter with a net impact of approximately 110 basis points on our gross margin in Q2. Non GAAP operating expenses were $484,000,000 which is down approximately 6% or $32,000,000 year over year.

This reflects the effect of actions we’ve taken towards our long range commitments of expanding margins while prioritizing key growth investments. As a result of our discipline, we did not experience the typical seasonal rise in OpEx that occurs post Q1. Non GAAP operating margin was 23.8 in Q2, which increased 160 basis points year over year. Operating profit grew approximately 4% year over year on lower revenue, reflecting increased operating leverage from the improved cost structure. Looking at our results below the line, non GAAP other expense, which is largely comprised of net interest expense, was $10,000,000 and non GAAP tax rate was 22.2%.

Note that the recent tax legislation had no impact on our Q2 tax rate as it was enacted after quarter end. Our average diluted shares were approximately 157,000,000, approximately 2,000,000 lower than last quarter driven by an increased level of share repurchases, net of dilution from employee equity awards. Altogether, non GAAP EPS of $1.19 per diluted share grew 9% year over year and came in well above our guidance range. Moving to cash flow, balance sheet and capital allocation items for the quarter. Cash flow provided by operations was a robust $234,000,000 capital expenditures were $30,000,000 and free cash flow was $2.00 $4,000,000 In Q2, we repurchased approximately 4,500,000.0 shares of Illumina stock for $380,000,000 at an average price of approximately $85 per share.

We intend to continue to repurchase incremental shares over the course of the year as part of our approximate $800,000,000 authorization remaining at the end of the quarter. Additionally, we entered into a definitive agreement with Standard Bio Tools under which Illumina will acquire Somologic and other specified assets for $350,000,000 in cash payable at closing, plus up to $75,000,000 in near term performance based milestones and royalties. We expect the deal to close in the 2026 subject to regulatory approvals. We remain hyper focused on maximizing our growth opportunities through capital allocation initiatives with high conviction in their contribution margins to our long term strategic plan. We ended the quarter with approximately 1,160,000,000 in cash, cash equivalents and short term investments and gross leverage of approximately 1.7x gross debt to last twelve months EBITDA.

Now moving to guidance for the year 2025. As you may have seen in the press release, we have raised our operating margin and EPS expectations for 2025 and are holding Rest of the World constant currency revenue growth at the range we provided in May. We’ve also increased our revenue expectations from China. Let me provide further details. Starting with revenue.

We’re raising our revenue guidance for the Greater China region by $25,000,000 at the midpoint to approximately $200,000,000 for the year. Although we remain restricted to export instruments into the country, we have seen resilience in consumables purchases and strong customer support that we believe will extend at least in part through Q3. For rest of the world, we are reiterating our revenue guidance of growth between 0% to 2% on constant currency. Hence, we now anticipate total alumina constant currency revenue decline to be in the range of minus 0.5% to minus 2.5%. Including FX changes, we now expect reported Illumina revenue in the range of $4,230,000,000 to $4,310,000,000 Now shifting into our product assumptions.

For rest of the world, we now expect sequencing consumables growth between 13%, up from flat to 2%, driven by strong sequencing activity from our clinical customers and aligning our guidance with our reported revenue to include the impact of pricing actions. We’re lowering our expectations for rest of the world sequencing instruments to a decline between 46% year over year, including the impact of pricing actions. This decrease is largely due to conservatism from our research customers that we saw towards the end of Q2. Although we still expect demand for NovaSeq X instruments to slightly increase and low throughput growth driven by placements of the MiSeq i100, we have seen weakness in mid throughput. Now moving down the P and L.

As previously communicated, the Illumina team is making good progress on our operational excellence initiatives and lowering our cost base. Our cost discipline as well as increased revenue driven by greater China outperformance and favorable FX rates has allowed us to raise our operating margin guidance by approximately 50 basis points to a range of 22% to 22.5%. Furthermore, earlier this month, new legislation will pass that allows US based r and d spend to be tax deductible. Given the scale of Illumina’s large US r and d base, we anticipate this bill having a positive effect on our tax rate for 2025 and beyond. We now expect our FY ’twenty five tax rate to be approximately 20%.

Given our increased level of share repurchases, we now expect FY ’twenty five WASO of approximately 157,000,000 shares. Bringing it all together, these developments have allowed us to raise our EPS guidance by 25¢ at the midpoint to a range of $4.45 to $4.55. Approximately $0.1 of this improvement is from tax changes, approximately $0.10 from China and the remainder from FX and operating margin improvements. To summarize, at the midpoint, our revised FY ’twenty five guidance reflects an increase in revenue of $50,000,000 an increase in op margin of 50 basis points and an increase in EPS of $0.25 Now moving to the 2025. For the third quarter, we expect revenue outside the Greater China region to grow between 12% year over year on a constant currency basis and revenue in Greater China region between $35,000,000 and $45,000,000.

Together, we anticipate total Illumina constant currency revenue decline to be in the range of 1.5% to 2.5%. We expect non GAAP operating margin of approximately 22%, non GAAP tax rate to be approximately 16%, VASO of approximately 155,000,000 shares and non GAAP earnings per share in the range of $1.15 to $1.19 For Q4, this implies an uptick in revenue, roughly half coming from usual seasonality in instrument purchases. We expect the remainder to come from a combination of data service offerings like AGD and new products like our proteomic solution. In closing, I want to express my continued appreciation to the Illumina team for their relentless focus on execution and delivering another quarter of progress towards our short and long term goals, which is allowing us to raise the guidance for the year. Thank you for joining our call today.

I will now invite the operator to open the line for q and a.

Conference Operator: At this time, if you would like to ask a question, please click on the raise hand button, which can be found on the black bar at the bottom of your screen. To give as many analysts as possible the opportunity to ask a question, please limit yourself to one question. If you have additional questions, please raise your hand again to be put into the queue. Our first question will come from Vijay Kumar with Evercore. Please unmute and ask your question.

Vijay Kumar, Analyst, Evercore: Congrats on the print share and execution. Just maybe my one question is on the guide change. If you could just give us a bridge here, right? Looks like instruments came down by 25,000,000. China up 25.

Maybe some was FX. What else? Like, did consumables change? You know, is there anything else changing on microarrays? I think you mentioned new products here, Encore.

And maybe, Jacob, you you can talk about new products and pipeline. How big of a deal is this? I feel like Street has has has not given enough attention on pipeline, but could this be more meaningful next year? Thank you.

Jacob Tyson, Chief Executive Officer, Illumina: Vijay, thank you very much, and thank you for your acknowledgment of our great quarter here. So you’re absolutely right. We have a lot in our pipeline. And in fact, I did did see the feedback from our early access customers here recently on both Constellation, on five base and on our spatial solutions. And I would say we had got very, very strong feedback from all three products.

Our customers are very happy to get access to this before. As you reminded earlier, we will probably more be launching it and get feedback from customers. Now we’re engaging with them very early so we can get feedback on it, but they can also start to be excited about it and start to think about publication but also making grants. So that is something that we believe will start to have an impact here already in ’twenty six. So we do believe that this will be an addition of growth starting from ’twenty six and onwards.

Ankur? Yes. Thanks, Jacob,

Ankur Dhingra, Chief Financial Officer, Illumina: and thanks Vijay as well. So to your question about the ins and outs for for the guide here, let me tell you let me parse it into two different ways based on the question you were asking. So one one is the guide’s up because of FX as well as increase in China in aggregate. The if you think about it from the rest of the world perspective, we are reducing our expectations on the instrumentation side based on just what we’ve seen in q two overall and primarily coming from the research market and that we’ve we’ve seen the pipeline work through during the quarter. But at the same time, the offset for that instrumentation is in consumables for the rest of the world.

We are increasing our expectations for the consumables business, which came in quite well in q two and as we see the pipeline for the rest of the year as well. The second parter on your question was around services. The two parts to that, one is we’ve talked about these data services business. If you recall last year, for the full year, we had about about, say, 80 to $90,000,000 full year business in that data services side coming from our EGD consortium, which was slightly heavily weighted towards the first half of the year last year, which is if you recall, I made a commentary during our earnings call last quarter to say that comparison becomes favorable for us in the back half of this year. We are anticipating some business in that space and potentially some of the new services that that we’re looking to launch here in the back half of the year.

And if all goes well, we will talk about it when we when we get to our ’26 guidance about what we anticipate from those services then.

Conference Operator: Your next question will come from Subbu Nambi with Guggenheim. Please go ahead.

Subbu Nambi, Analyst, Guggenheim: Hey, guys. Thank you for taking my question. Have you guys seen any change in customer behavior in anticipation of competition? How are you preparing for that possibility? As we look at the Roche platform, one attribute that seems hard for you to match based on the current engineering is probably turnaround time.

So building off of Vijay’s question, is there something in the pipeline that would allow you to be more competitive with a high throughput platform when it comes to turnaround time?

Jacob Tyson, Chief Executive Officer, Illumina: Yeah. So so we definitely spend a lot of time thinking about competition, but I would say we spend even more time thinking about our customers and how we continue to to serve them every day. And this is something that I saw coming into this company is that I think we could do a better job on engaging with our customers, as I mentioned before, engaging them on early access to our technology, sharing the road map, and other things. So so that’s kind of what our main focus is, to make sure that we are always supporting our customers. Now we continue to innovate.

We have the largest focus and the largest budget in this industry with from r and d perspective. And as as you can anticipate also, we have a lot of of things going on. We have been out there speaking openly about what we are working on in the multiomics space. But clearly, are not sharing everything. We are doing also on our instrumentations to address what we believe are the main growth markets going forward, so it’s particularly is in the clinical space, also in the decentralized space.

We are looking to the attributes. We are working a lot with our customers to understand also what are the attributes they’re looking for. And you’re right. There are customer base that that are looking for fast turnaround time. This is niche market in the NICU where you need to have a very fast result out, and you will compromise maybe in the ease of use or even the quality of sequencing.

But if you look for the vast majority, here we are looking in where an overnight run is more than reasonable, and and you can get all the information you you want out. So that’s the market we’re focusing on, and our technology is very powerful to support that part of the business. And in the end, our focus will be the highest quality insight for the lowest end to end, independent on what customer we are addressing.

Conference Operator: Your next question will come from Puneet Souda with Leerink.

Puneet Souda, Analyst, Leerink: Hi, Jacob and Ankhu. Thanks for taking my questions. So just wondering, did you see any pull forward from the customers in the quarter? We were hearing some of the customers were stock stocking ahead of the tariffs in EBIT you know, during during May and April as well. And and then just wondering, when you think about the customers on the clinical side, are you hearing from some of your larger customers?

The clinical transition rate here is slow, but this is more in line with what you had expected for the x transition. I mean, just trying to understand, know, what are some of the larger customers with large fleets of x large fleets of 6,000 telling you about transition to x? I think the question there is is if could that transition happen aggressively, you know, in the in in the second half? And what are you hearing from those customers? Thank you.

Jacob Tyson, Chief Executive Officer, Illumina: Yeah. So let me let me start to address the first one about whether we saw any pull forward. We didn’t. We we saw, to that extent, a normal quarter. What what we do see is that we have increased backlog that in the beginning when we launched DX, obviously, many customers needed to test out and started to validate, and it was unclear what what volume they and when they would shift that over.

So in that sense, it was more from hand to mouth, so to say, from an order perspective. Now many of our customers feel very comfortable in in running the x and running that in in manufacturing mode or in production mode. And that also means that they can better plan, which which is is now showing up in a in a higher in a higher backlog. So so that is where we expect it to be. We we as you you mentioned, we continue to see the transition to the x happening.

But again, if you go down if you dig down into the individual customer level, there are, of course, each customer have the plans. They wanna validate. They wanna make sure they can and you can see many of our clinical customers are are growing very rapidly. So they do not wanna compromise that growth. So they are very you can say, they have a very clear program for when they wanna move it over.

And there’s no cliff happening where every everything is moved over in one quarter, another quarter, but it will happen for our customers saying, now it’s time for us to shift over. And then you will see them that customer rapidly move over an assay or an a number of assays. So we expect that to happen fluently here. There will be maybe a quarter in that will that will be a little higher, maybe a quarter that will be a little over from an from a transition perspective. But we don’t see any cliff happening anytime soon here at all.

Conference Operator: Our next question will come from Doug Schenkel with Wolfe.

Doug Schenkel, Analyst, Wolfe: So I believe your guidance implies the company will generate about two points of revenue growth in the fourth quarter, excluding China, which would be the highest rate in at least two years, assuming I have that right. So my first question is, well, do I have that right? And if so, what’s the significance of that in the context of thinking of some of the pricing issues and other things that you’ve been working through over the last couple of years? And then secondly, building off of that, and if if I may, you know, just make three key observations heading into the question. One, exiting 2025, global research will be under 40% of sales, which, you know, still could decline given the NIH backdrop in 2026, you know, even recognizing some of the good news we got out of the senate today.

But but on a weighted basis, even recognizing maybe it’s not gonna be as bad as feared, that could be a two to three point headwind next year. Second, China could remain under pressure, but China, you know, could be down to around 2% of sales exiting the year. So whether it’s a good guy or a bad guy, it’s getting small. And then third, a clear good news, a clear good guy is clinical will be over 60% of sales growing double digits with much higher volume offset by some pricing. So on a weighted basis, that could grow six points.

You got maybe a two to three point growth headwind when it comes to the research end market. Mathematically, when I blend these things, it it seems like you should be able to grow core revenue low single digits and maybe even mid single digits excluding China next year. Is this a reasonable framework as we sit here today, and is there anything else you’d want us to contemplate as we’re updating our models, whether it’s, you know, upside contributions from pipeline, some caution when it comes to competition? Anything would be helpful on on all of these fronts. Thank you.

Jacob Tyson, Chief Executive Officer, Illumina: Yes. Thanks, doc. And that was a long question to to really ask me whether I’m providing some guidance on ’26, which I think is a little too early. We are we’re very much focusing on executing here on on on the business here for for ’25, and but we do see good momentum. And what I will leave you with here is that we are as we mentioned also last year when we put out our strategy is expect that the X Transition is the main driver for growth over the next period of time, and it will be the one that we thereby start to step into growth.

And thereby, we expect ’twenty six to look better than ’twenty five and ’twenty seven look better than ’twenty six. That’s kind of in the logic of things. As you also mentioned, there’s, of course, in and out. But our main growth driver will be, going forward, also in the clinical space, and I think that is very much supported by the evidence of all our clinical customers of the result they are showing. And we continue to see that the X will be the main driver of this.

We also expect that Multionics will still to start to add some at least one percent point of growth here coming into ’26, ’27, probably more ’27 level. So that’s where we are today, but we are we do believe that the future is very exciting. The markets we are serving are large. Yes. There will be ins and outs, and and we will be focusing on our our the business that we can fully control, which is, of course, more than 95 of our business, which is outside China.

Conference Operator: Your next question will come from Yves Verstein with Bernstein.

Yves Verstein, Analyst, Bernstein: Hi, there. Good afternoon. Thanks so much for taking the question. Following up on one of your answers, you said that you didn’t see any pull forward in advance of tariffs. But what about the China consumables?

How much of that, if any, was pulled forward maybe in advance of of, you know, from from current customers worried about potentially not being able to buy more consumables in the not so distant future. And to that point, is it fair to say that your guidance increase for China could be quite specific to 2025 and not necessarily a sign of an improving outlook for 2026.

Jacob Tyson, Chief Executive Officer, Illumina: Yeah. Look, Yves, so let me let me go back and talk about China even though I I do not like to spend too much time on on a very small part of our of our business. But but just to put it in context here is that we I’m very pleased with what I see. Jenny, our general manager in in China and the Chinese team, what they’re doing. They’re doing an amazing job to to support our customers out there, and it I think it speaks volume also that we continue to see a lot of interest from our customers.

And and I think the feedback we’re getting from customers is that they really want us to stay in China based on the high quality we provide, the innovations, and, of course, the ecosystem that that is very important for the Chinese customers also. So we do see a lot of interest for them. But as you also mentioned, overall, under the current circumstances, the situation is unsustainable. So we continue to work very diligently with the regulators to get a resolution. From a pull forward perspective, I think we saw some of that maybe in the first quarter, I don’t we don’t see that right now.

I think we are more into a natural run rate for for the business, and and that’s also what we have. So so we feel good about where how we have guided for for China.

Ankur Dhingra, Chief Financial Officer, Illumina: And So, Iv yeah. Iv, I would add only a couple things. So thanks, Jacob. Pull forward in in the rest of the world outside China, really not much of a pull forward. We did see good orders.

Just a reminder, but our largest part of the business, which is high throughput consumables on x, there is a limited shelf life. So the pull pull pull forward really cannot be significant. We saw orders for future shipping, but not necessarily a pull forward in shipments during q two. And to your second part about China, as Jacob said, we’re in discussion, but the raise of guidance in China for q three, you’re right. We’re not thinking about it for the for the long term.

It is for the current quarter. Our working model there, as Jacob is saying, is we’re in discussion with the authorities to get to a constructive resolution here for the long run.

Conference Operator: Your next question will come from David Westenberg with Piper Sandler.

David Westenberg, Analyst, Piper Sandler: Hi. Thanks for taking the question, and congrats on a good quarter here. So I want to stay with the clinical, Cliff. I know that clinical has been a great market actually for you the last three years relative to academic. So but, you know, maybe there is a little bit of of some uncertainty from from some investors.

So can you talk about spending patterns that you’ve seen from clinical customers and maybe even isolate some that have had it since the very beginning, the first year, and what their spending has looked like as we look now into q three. And if there’s any granularity in terms of customer transition patterns, like their entire fleet versus a portion of their fleet and how that’s kind of impacting spending in clinical. And, you know, secondly and just in this transition, you’ve also mentioned this is clinical. Yours it only went from 43 to 44% of the of the volume on x. If you have a big jump in x in the back half of the year driven by clinical, why wouldn’t that see a revenue drop there?

So thank you for taking the question.

Jacob Tyson, Chief Executive Officer, Illumina: Hey, Dave. So thanks for that. So overall, let me start with just positioning this a little bit, and then we can have Ankur dig in further into the details. But you’re absolutely right that the clinical part of our business is very strong, And I truly believe this has continued to be a strong market for us for the foreseeable future, which is quite far out there. The markets are very attractive.

We continue to see a lot of opportunities in the oncology space. As we all know, there’s a lot going on the therapy selection as part of it. But I mean, just opening up for the MRD and, of course, in the end, screening will also be meaningful eventually. So that’s a long horizon on the opportunity in the clinical oncology space. And actually, in the genetic disease testing area also, rare diseases and others, where we see a lot of interest both to expand rare disease testing for a broader part of the population.

Rare disease is not as rare as you would think. And then also shifting into newborn screening, which is going to be a large opportunity going forward. So we absolutely agree that there big opportunities in the clinical space and will be a main driver for Illumina going forward. Now as you mentioned down into the details around what a transition looks like, I’ll start by saying that overall, most customers, if they have been on the six ks, they are making a decision that when they shift over to the x, that mostly most of the time, they are not only just trying to reduce the cost of the test, they’re actually trying to expand the test. This is a very and highly competitive environment.

So for many of our customers, it’s about to stay competitive. And the way you do that is to provide even better assays for your customers, and that is by expanding them and providing more insights. Secondly, there are customers that will stay on the six k until the end of life, so to say, for the assay, where they feel like they maybe have two years more end of life. And it’s simply from a from a finance perspective, it it doesn’t make sense for them investment to shift it over to the to the x. So that’s on the highest level of of the transition.

Ankur, do you have

Ankur Dhingra, Chief Financial Officer, Illumina: I think that’s that’s fairly put, Jacob. The there’s it’s not an overnight change. It takes validation, and it’s a it’s a step by step process. And, Dave, you’ve seen we’ve seen in the past as well the the transition quarter to quarter has not been a linear line. It is lumpy.

Some moves in a quarter, some doesn’t. So I’m not reading a whole lot into this or to say that we suddenly have a big material change coming here within the next couple quarters either. Our goal still has been that overall, the volume 75 of the volume shifts to x in the back half of the year or in the half two of this year. Based on what we’ve seen this quarter, it might be more towards latter part of q four. But then again, it’ll it’ll be lumpy quarter to quarter.

Conference Operator: Your next question will come from Tycho Peterson with Jefferies.

Brian Blanchett, Interim Head of Investor Relations, Illumina0: Hey. Thanks. Understanding your, you know, instrument guidance overall here, how do

Jacob Tyson, Chief Executive Officer, Illumina: you think how should we

Brian Blanchett, Interim Head of Investor Relations, Illumina0: think about the trajectory of X placements, you know, for the rest of the year? I’m asking because, you know, with X as a percentage of high throughput revenues, it only increased by 1%. You went from 43% to 44% this past quarter. So how do we get comfortable you can hit 50% by the end of the year? And then can you also comment on what percentage of customers are now getting, 30 b reads?

You know, I know you introduced software to enable that, but that would have, I would think, some implications on consumable. And then on curve, just on operating margins, you were much better than expected. Was was that all tariff unwind or or from the cost out programs or both? Thanks.

Brian Blanchett, Interim Head of Investor Relations, Illumina: Hey, Tycho. Were you asking about the the 10 b reads? Or sorry. What was

Ankur Dhingra, Chief Financial Officer, Illumina: that question?

Jacob Tyson, Chief Executive Officer, Illumina: 30 b?

Brian Blanchett, Interim Head of Investor Relations, Illumina0: Yeah. The version 1.3 software released from last year. But the main question is about x placements.

Jacob Tyson, Chief Executive Officer, Illumina: Yeah. So so let me start there on the x placement. It’s that remind also that I would like to remind you also that we have very strong placements in Q4 with more than 90 placements and also into Q1 where we also had 60 placements. So many of those customers that purchased and where we installed Xs are still using that, especially in the clinical space where we had the vast majority of instruments being placed, are still using and bringing them into the production. So you ask that you are you will actually see that also have a meaningful impact here in the second half of the year.

Now this won’t be a cliff at all, but it will be also you will continue to see the shift of the X transition. For the rest of the year, we as we guided before, we we still believe that there is, you know, and on average basis, is between fifty and sixty instrument being placed per per quarter. And there is an opportunity potential to to see more instrument being placed in in the in the fourth quarter depending on how we how we see budgets coming coming to fruition here. On on the flow cell itself, you’re right that with the 1.3 release of our software, we did a lot of of work to improve, and we will continue to do that on on our customer experience. And and a part of that was also to improve some of the yield in in the 25 b, but we are not committing to a 30 b at this point.

Ankur Dhingra, Chief Financial Officer, Illumina: And then I’ll cover the operating margin side. Tycho, bulk of the operating margin improvement was based on the cost actions that we some of them from last year and then some based on the actions we took in the early part of the year here beginning to get reflected in the p and l. The tariff side, we started work on it and and beginning to see a pathway towards reducing the impact of tariffs. Not much of that was in our in our q two results per se. We think in the in the latter half of the year and certainly early twenty six, we’ll begin to see some of those benefits begin to come through.

Mhmm. But not in q two. As as I said during my call, we expect our our OpEx to kinda run at that lower level, reflecting almost over a $100,000,000 annualized improvement in our OpEx rate now based on what you’re seeing in q two. So that’s a that’s a structural change that we have gone through, in our cost structure, which obviously should should set us up well for much better operating leverage going forward as as revenue returns to growth.

Conference Operator: Your next question will come from Kyle Mixon with Canaccord.

Brian Blanchett, Interim Head of Investor Relations, Illumina1: Hey, guys. Thanks for the questions. Nice quarter. The growth framework, Jacob, you talked about in the past, I think, like, volume growth in the 20 to 30% range, price decreases as well in the mid teens. I just was wondering if you could size how much of that volume growth will be from clinical versus research.

I know there were some data points and assumptions that were talked about earlier. Just would love to hear your thoughts on And then second, you know, do you have the cushion to push price lower if you have to if and when new competitive threats enter the fold, I. That the Roche kind of unveils its pricing? Thanks.

Jacob Tyson, Chief Executive Officer, Illumina: Yes. So we continue to see, as we mentioned also in prepared remarks, we continue to see strong volume growth with our customers. And if you dig a little bit deeper into this quarter, I think it should be obvious also that Clinical was stronger than the research segment. So that was as anticipated because of all the ins and outs with NIH and other types of funding right now. But I think that’s while it’s been a little more a little bigger difference this time around, I think we we do expect that we will see clinical growth be stronger on the long horizon simply because the opportunity there is is larger.

While we do actually think that when we see Multionomics starting to really take off, that that will also start to improve on the research side of things. But that might be a few a little further ahead in our strategic planning period here. I think on the pricing perspective, we are still very stable, and we are within the expected range of the pricing decline we are seeing. On what we can do on pricing, look, I mean, we want to make sure we always understand our customer and and what how they can up how what they need in order to optimize their performance. And we, of course, we also having conversation about if there are new applications that can be opened up by differentiating in in pricing.

So so that is something we always will have with our customers. I think there’s a saying out there that there might be other there might be competition that have a lower pricing, but in most circumstances, Illumina have the best cost structure. So we will always be able to compete if we choose to do so on pricing.

Conference Operator: Your next question will come from Dan Arias with Stifel. Star six will allow you to unmute, Dan.

Brian Blanchett, Interim Head of Investor Relations, Illumina2: Hi, guys. Thanks for the questions. I was having some phone issues. So, Ankur, apologies if you if you touched on this already. But can you just talk a little bit about TV growth from here and high throughput?

Do you think you can stay in that 30% range in 3Q and 4Q? And if so, does that mean that we can still feel okay about that framework for 2026 that you’ve laid out sort of mid-twenty GB growth and then a mid teens pricing headwind as an offset? Thanks.

Ankur Dhingra, Chief Financial Officer, Illumina: Okay. Yeah. Good question, Dan. So we we usually get that as part of the script. I talk about two things.

One, generally, to talk about the connected instruments. And when we look at our our runs on those connected instruments in high throughput, that was above 30% overall. The dynamic that we saw during the quarter was clinical, as we’ve been talking about, remained quite strong. But we did see some slowdown on the research side, especially in The US broader research side of things, which was as anticipated given everything that’s going on in that space from a from a funding environment perspective. Looking forward, do I anticipate that it can stay above the the 30% mark?

We think so. I think the clinical specifically, and also at least rest of the world outside China, though China hasn’t been connected, staying above 30%, there’s still several structural support that is coming in terms of especially MRD being a very attractive space. We’ve also seen during the quarter a good movement on the reimbursement side in the in the genetic disease side of tests and otherwise. So we are seeing the adoption of whole genome gaining traction even from a reimbursement perspective. So there are good structural developments, especially on the clinical side of things that can drive the the the GB growth.

On the research side of things, think our play with the proteomics should be a net new incremental from a sequencing perspective. So as we close the deal or we launch the the IPP here, that tool also attempts to bring some of the proteomics into the sequencing side of the business. It has always been heavily on the mass spec side as a market. But as we as we bring that into the sequencing ecosystem, that’s another additional area that we’re adding into the sequencing ecosystem.

Jacob Tyson, Chief Executive Officer, Illumina: But then just just to take a step at this also just to highlight is that, I think we mentioned this before, and and I still stay with this, is that the opportunity in this space is tremendous. And the activity in this space continues to be very, very strong. So I don’t I don’t see why there would be any reason for not continuing with a very strong growth. Granted, this will shift a little bit quarter to quarter, but if you look at the the long horizon, the opportunity in this space is very, very solid. And we’re seeing that in both, as we mentioned before, oncology, genetic disease testing.

But the next thing that will happen is that you will look into new areas that we haven’t really focused on right now, cardiovascular, neurodeceases and other things. So this will be a long term with a very strong growth opportunity.

Conference Operator: Your next question will come from Dan Brennan with TD Cowen.

Brian Blanchett, Interim Head of Investor Relations, Illumina3: Great. Thank you for taking the questions. Maybe just a couple. Maybe on the mid throughput. I think, Ankur, you made a comment when you updated the guide about mid throughput trends maybe not as robust.

Can you speak to that, the market, maybe competition? And then on the earnings raise for the R and D expensing, is that just on a go forward basis? Or is that retroactive to the beginning of the year? And just wondering if you kind of baked in the full amount. And then the final point would just be, can you just remind us on the broader U.

S. Academic kind of customer base? I know you’ve given us some color in the past. What’s kind of assumed now in the full year guide from a revenue standpoint year over year? And kind of has that changed with the updated guide?

So

Jacob Tyson, Chief Executive Officer, Illumina: Dan, I’ll start talking about the mid throughput here. And just to put it some perspective, most of our high throughput customers, when they purchase an x, they do that to run high volume and with high utilization, and they do that in a production like logic. So they know when they buy one that they want to run it every day in and out. When you look into the mid throughput segment, which much stronger associated with the research space, I think we have approximately 75% of that business, the one k, two k business sitting there. These are more project based.

And thereby also, there’s a consideration when there are some conservatives built in for the different companies or even from the academic institutions. They are pushing out the decision to acquire new instruments. And we are seeing that, that the decision making process is taking a longer time. We’re also seeing that even though they still run the project, we’re also seeing that some of that is being outsourced to service providers. So the business is still there, but it shows up in the high throughput segment.

And we do anticipate when the macroeconomic macro environment will change that we’ll see some of those customers go back and want to back to in source some of their testing because they feel and they wanna keep their samples in in house. So at the same time, the MySeq I 100 has been super successful here. The launch, we placed more than 500 instruments from the from the start of of our launch in beginning or late late twenty twenty four. And and, obviously, it is in the low throughput area, but it also, with the capacity that can be done in the myCGI 100, is pushing into the, I would call it, low end of the mid through area. So we’re also seeing dynamic coming from that end.

And then finally, you’re right. This space is where we see most competition, but that hasn’t really changed. The dynamic in that space hasn’t changed over the past quarter, so I wouldn’t attribute any of the softwares you see right now specifically to competition. So that’s high level how I I see things right now. Ankur?

Ankur Dhingra, Chief Financial Officer, Illumina: Yeah. Sure. So I’ll address the second part of the question there on the academia customer base. So our guide and expectations for that market part of the market remain unchanged. And so what we saw in q two from a business trend perspective was somewhat similar to what we saw towards the latter part of q one.

So our our expectation there, I believe, we said 15% decline for the year for that for the business. In last call, it’s still it’s still the same.

Conference Operator: This concludes the q and a section of the call. I would now like to turn the call back to Brian Blanchett for closing remarks.

Brian Blanchett, Interim Head of Investor Relations, Illumina: Thank you for joining us today. A replay of this call will be available in the investor section of our website. This concludes our call, and we look forward to seeing you at our upcoming events. Thank you.

Conference Operator: This concludes today’s call. We thank you for your participation. You may disconnect at this time, and have a great day.

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